Bioinformatic Cloud Resources

Bioinformatic Cloud Resources

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1. CloudBLAST

:Scalable BLAST in the cloud.

2. CloudBurst

:Highly sensitive short-read mapping.

3.Cloud RSD

:Reciprocal smallest distance ortholog detection.

4. Contrail

:De novo assembly of large genomes.

5.BFAST

:BFAST stands for "Blat-like Fast Accurate Search Tool ". "BFAST facilitates the fast and accurate mapping of short reads to reference sequences ".

6. Crossbow

:Alignment and SNP genotyping.

7. Myrna (B.L., K. Hansen and J. Leek, unpublished data)

:Differential expression analysis of mRNA-seq.

8.Quake (D.R. Kelley, M.C.S. and S.L.S., unpublished data)

:Quality guided correction of short reads.
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Analysis environments and data sets

1. AWS Public Data

:Cloud copies of Ensembl, GenBank, 1000 Genomes and other data.

2. CLoVR

:Genome and metagenome annotation and analysis

3.Cloud BioLinux

:Genome assembly and alignment.

4. Galaxy

:Platform for interactive large-scale genome analysis.
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