Tuesday, April 21, 2020

Basic Bioinformatics Terms on letter J

Basic Bioinformatics Terms on letter A
Basic Bioinformatics Terms on letter J

These Basic Bioinformatics Terms on letter - J can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.


1. What is "Jalview"?

    Jalview - It is a popular tool for editing and analyzing multiple sequence alignments.



2. What is "Java applet"?

    Java applet - It is a small piece of software that your browser installs automatically and that runs on your computer.

Basic Bioinformatics Terms on letter I

Basic Bioinformatics Terms on letter A
Basic Bioinformatics Terms on letter I
These Basic Bioinformatics Terms on letter - I can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Identity"?
    Identity - It is a percentage of identical amino acids or nucleotides in the alignment of two sequences. Usually the identity is measured on the aligned residues with gaps ignored.


2. What is "Illumina"?

    Illumina - It is a company located in San Diego, CA that provides sequencing platforms such as MiSeq, HiSeq, HiSeq2500, NextSeq and GA II.

Basic Bioinformatics Terms on letter H

Basic Bioinformatics Terms on letter H
Basic Bioinformatics Terms on letter H
These Basic Bioinformatics Terms on letter - H can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Halotype"?
    Haplotype - It is a collection of alleles in one individual that are located on one chromosome. Alleles within a haplotype are often inherited as a single unit from one generation to the next. In SNP studies, haplotypes refer to a group of genomic variations found repeatedly in many individuals within a population.


2. What is "Heat Map"?

    Heat map - It is a graphical representation of data where the individual values contained in a matrix are represented as colors.

Saturday, April 18, 2020

Basic Bioinformatics Terms on letter G

Basic Bioinformatics Terms on letter G
Basic Bioinformatics Terms on letter G

These Basic Bioinformatics Terms on letter - G. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.


1. What is "GA II Illumina sequencing platform"?

    GA II Illumina sequencing platform that generates 40 Mb sequence per run with paired read lengths of 70 bp.



2. What is "Gap"?

    Gap - It is in sequencing a segment of DNA that has not been sequenced but is flanked by sequenced DNA. Also used as a synonym for insertion or deletion in sequence alignment.

Basic Bioinformatics Terms on letter F

Basic Bioinformatics Terms on letter F <meta name="discription="content="Basic Bioinformatics Terms on letters A to Z. Solve it to check your knowledge of Bioinformatics."> <style type="text/css"> .collapsible { background-color: #5334eb; color: white; cursor: pointer; padding:5px; width: 26%; border: none; text-align: left; outline: none; font-size: 25px; } .active, .collapsible:hover { background-color: #db34eb; } .content { padding: 3px; display: none; overflow: hidden; width: 100%; background-color: #a2fca8; font-size: 25px; } </style> </head> <body> <div class="separator" style="clear: both; text-align: center;"> <a href="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjCrTyWDFc4E78dcAPp-HVoNiTm714nAQhEYeLMa7sRFrzjqVl5jToFjqe9eScqXvfWvOjf9jscLOWfHmieK5ydUjRXYl0H1e6Cbe2m22IBt6pmATvtizdecxQdXWntdD9n-nURvuvDfj8/s1600/1.jpg" imageanchor="1" style="clear: right; float: right; margin-bottom: 1em; margin-left: 1em;"><img border="0" src="https://blogger.googleusercontent.com/img/b/R29vZ2xl/AVvXsEjCrTyWDFc4E78dcAPp-HVoNiTm714nAQhEYeLMa7sRFrzjqVl5jToFjqe9eScqXvfWvOjf9jscLOWfHmieK5ydUjRXYl0H1e6Cbe2m22IBt6pmATvtizdecxQdXWntdD9n-nURvuvDfj8/s320/1.jpg" width="320" height="200" data-original-width="400" data-original-height="250" title="Basic Bioinformatics Terms on letter F" alt="Basic Bioinformatics Terms on letter F" /></a></div> <p> <b> These Basic Bioinformatics Terms on letter - F. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics. </b> </p> <br> <form name="quiz"> 1. <b>What is "FASTA "? </b> <ul style="margin-top: 1pt"> <button type="button" class="collapsible">View Answer</button> <div class="content"> <p> FASTA simple text format for DNA or protein. </p> </div> <br> </ul> <br> 2. <b> What is "Field"? </b> <ul style="margin-top: 1pt"> <br> <button type="button" class="collapsible">View Answer</button> <div class="content"> <p> Field - It is in the context of databases, a well-delimited part of an entry containing information of a precise nature (author, date, etc.). <br>You can normally search databases by explicitly targeting specific fields. </p> </div> </ul> <hr class="more" /> <br> 3. <b> What is "Fileserver"?</b> <ul style="margin-top: 1pt"> <br> <button type="button" class="collapsible">View Answer</button> <div class="content"> <p> Fileserver - It is a computer that provides files to other computers via a network. </p> </div> </ul> <br> 4. <b> What is "Finished sequence DNA"? </b> <ul style="margin-top: 1pt"> <br> <button type="button" class="collapsible">View Answer</button> <div class="content"> <p> Finished sequence DNA has been sequenced at least eight times and there are no gaps, and contains no more than 1 error in 10,000 base pairs.</p> </div> </ul> <br> 5. <b> What is "FPKM"? </b> <ul style="margin-top: 1pt"> <br> <button type="button" class="collapsible">View Answer</button> <div class="content"> <p> FPKM - these are Fragments Per Kilobase Of Exon Per Million Fragments Mapped; approximates the relative abundance of transcripts in terms of fragments observed from an RNAseq experiment. </p> </div> </ul> <br> 6. <b> What is "FTP"? </b> <ul style="margin-top: 1pt"> <br> <button type="button" class="collapsible">View Answer</button> <div class="content"> <p> FTP - It is a file transfer protocol, an internet protocol that defines a commend method of transferring files across networks and between remote computers. </p> </div> </ul> <br> <br> <script async src="//pagead2.googlesyndication.com/pagead/js/adsbygoogle.js"></script> <!-- Between Post_Rectangle_Ad --> <ins class="adsbygoogle" style="display:inline-block;width:300px;height:250px" data-ad-client="ca-pub-6325725335052758" data-ad-slot="5361047021"></ins> <script> (adsbygoogle = window.adsbygoogle || []).push({}); </script> <br> </form> <b> Basic Terms in Bioinformatics=> <h2> <a href="https://www.blogger.com/blogger.g?blogID=812213065205123104" style="color: blue; display: inline; text-align: left;"> A..</a> <a href="https://bioinformaticianneeraj.blogspot.com/2020/04/basic-bioinformatics-terms-on-letter-b.html" style="color: blue; display: inline; text-align: left;"> B..</a> <a href="https://bioinformaticianneeraj.blogspot.com/2020/04/basic-bioinformatics-terms-on-letter-c.html" style="color: blue; display: inline; text-align: left;"> C..</a> <a href="https://bioinformaticianneeraj.blogspot.com/2020/04/basic-bioinformatics-terms-on-letter-d.html" style="color: blue; display: inline; text-align: left;"> D..</a> <a href="https://bioinformaticianneeraj.blogspot.com/2020/04/basic-bioinformatics-terms-on-letter-e.html" style="color: blue; display: inline; text-align: left;"> E..</a> <a href="https://bioinformaticianneeraj.blogspot.com/2020/04/basic-bioinformatics-terms-on-letter-f.html" style="color: blue; display: inline; text-align: left;"> F..</a> </h2> </b> </body> <script> var coll = document.getElementsByClassName("collapsible"); var i; for (i = 0; i < coll.length; i++) { coll[i].addEventListener("click", function() { this.classList.toggle("active"); var content = this.nextElementSibling; if (content.style.display === "block") { content.style.display = "none"; } else { content.style.display = "block"; } }); } </script> </html>

Basic Bioinformatics Terms on letter E

Basic Bioinformatics Terms on letter E
Basic Bioinformatics Terms on letter E

These Basic Bioinformatics Terms on letter - E.It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.


1. What is "E value"?

    E value (Expect value) - when performing a BLAST search, you will obtain an E-value for each sequence that is retrieved.
    An E-value can be thought of as the probability that two sequences are similar to each other by chance.
    Therefore E-values are best when they are small (e.g. 1 x 10-12).



2. What is "EC number"?

    EC number - It is Enzyme Commission number a numerical classification scheme for enzymes based on the chemical reactions they catalyze.

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