Basic Bioinformatics Terms on letter Y

These Basic Bioinformatics Terms on letter - Y. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Yeast artificial chromosome (YAC)"?

Yeast artificial chromosome (YAC)- It is a cloning vector that replicates in yeast and can contain inserts about 1 Mb in size.

Basic Terms in Bioinformatics=>

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Basic Bioinformatics Terms on letter W

These Basic Bioinformatics Terms on letter - W. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "WAIS"?

WAIS - It is wide area information server, a service that allows users to intelligently search for information among databases distributed throughout the Internet.

2. What is "WAN"?

WAN - wide area network, a group of geographically separated computers connected via

Basic Bioinformatics Terms on letter V

These Basic Bioinformatics Terms on letter - V. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Venn diagram"?

Venn diagram - It is a diagram representing mathematical or logical sets pictorially as circles or closed curves within an enclosing rectangle (the universal set), common elements of the sets being represented by the areas of overlap among the circles

Basic Terms in Bioinformatics=>

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Basic Bioinformatics Terms on letter U

These Basic Bioinformatics Terms on letter - U. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "URL"?

URL It is uniform resource locator, a standardized way of representing different documents, media, and network services on the World Wide Web.
It gives every document of the Internet its own unique address. URLs are most commonly associated with Web sites but also apply to e-mail servers, Gopher servers and any other computer with an Internet address.

2. What is "untranslated region (UTR)"?

untranslated region (UTR) -It is a portion of mRNA that is not translated’ found on 5’ and 3’ ends of mRNA.

Basic Bioinformatics Terms on letter T

These Basic Bioinformatics Terms on letter - T. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "tBLASTx"?

tBLASTx - It compares the six-frame translations of a nucleotide query sequence against the six-frame translations of a nucleotide sequence database.

2. What is "TCP/IP"?

TCP/IP - It is a transmission control protocol/internet protocol, The software communication protocol of the Internet.
One computer communicates with another computer through the Internet using TCP/IP format.

Basic Bioinformatics Terms on letter S

These Basic Bioinformatics Terms on letter - S. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "SAM file"?

SAM file - It is a text format for storing sequence data in a series of tab delimited ASCII columns.

2. What is "Sanger sequencing"?

Sanger sequencing -It is dideoxy DNA sequencing method.

Basic Bioinformatics Terms on letter R

These Basic Bioinformatics Terms on letter - R. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is " Real time PCR (RT-PCR)"?

Real time PCR (RT-PCR) - It is a molecular method that is sometimes confused with reverse transcriptase PCR. Real time PCR uses the specificity of PCR to measure the number of template molecules in your starting material.

2. What is "Reductionist"?

Reductionist - It is a person who dissects a complex system into increasingly smaller parts in order to understand it.

Basic Bioinformatics Terms on letter Q

These Basic Bioinformatics Terms on letter - Q. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Query"?

Query - It is the sequence used to scan a database for sequence similarity.

2. What is "qPCR"?

qPCR - It is a quantitative PCR, synonym for real-time PCR.

Basic Terms in Bioinformatics=>

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Basic Bioinformatics Terms on letter P

These Basic Bioinformatics Terms on letter - P. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "PacBio RSII"?

PacBio RSII - It is a sequencing platform available through Pacific Biosciences in Menlo Park, CA that generates 250 Mb sequence per run with an average read length of 4,500 bp.

2. What is "Pairwise alignment"?

Pairwise alignment - It is a alignment of two sequences.

Basic Bioinformatics Terms on letter O

These Basic Bioinformatics Terms on letter - O. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Offline"?

Offline - It describes actions or tasks performed when not connected to another computer via a network.

2. What is "Oligonucleotide (oligos)"?

Oligonucleotide (oligos) - It is ssDNA polymers of unspecified length. The oligo sequence is determined by the investigator and synthesized in vitro.
Oligos are used to probe blots, prime sequencing reactions, and PCR, as well as for spotting on DNA microarrays.

Basic Bioinformatics Terms on letter N

These Basic Bioinformatics Terms on letter - N. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "NCBI"?

NCBI - It is National Center for Biotechnology Information a federally funded part of the U.S. National Library of Medicine. NCBI is the home of GenBank, BLAST, COG, and many other genomic databases and computational tools.

2. What is "Neighbor joining(NJ)"?

Neighbor joining, NJ - It is the most popular method for reconstructing phylogenetic trees.

Basic Bioinformatics Terms on letter M

These Basic Bioinformatics Terms on letter - M. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Macroarrays/Microarrays "?

Microarrays are small spots of DNA or protein and the identity of the spotted material is known.
Macroarrays are bacterial, yeast or similar colonies on plates used to determine functional consequences of genomic manipulations.

2. What is "Mass spectrometry"?

Mass spectrometry, MS is a technique that allows investigators to separate proteins based on their mass to charge ration (m/z).
The m/z for each protein allows them to be identified and quantified from complex mixtures.
This proteomics tool is often used in pairs and called tandem mass spectrometry (MS/MS).
Protein samples are first ionized then inserted into MS/MS by either laser-based methods (MALDI, SELDI) or an electrospray method (ESI).

Basic Bioinformatics Terms on letter K

These Basic Bioinformatics Terms on letter - K. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "kb"?

Kb - It is kilobase, 1,000 base pairs of DNA sequence.

2. What is "KEGG, Kyoto Encyclopedia of Genes and Genomes"?

KEGG, Kyoto Encyclopedia of Genes and Genomes - It is a worldfamous Japanese database on genomes and biochemical pathways.

Basic Bioinformatics Terms on letter L

These Basic Bioinformatics Terms on letter - L. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "LAN"?

LAN - It is a local area network, two or more computers connected together via cabling.

2. What is "Lateral transfer"?

Lateral transfer - It is a see Horizontal transfer, a gene acquired from another organism as opposed to inheriting it from an ancestor.

Basic Bioinformatics Terms on letter J

These Basic Bioinformatics Terms on letter - J can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Jalview"?

Jalview - It is a popular tool for editing and analyzing multiple sequence alignments.

2. What is "Java applet"?

Java applet - It is a small piece of software that your browser installs automatically and that runs on your computer.

Basic Bioinformatics Terms on letter I

These Basic Bioinformatics Terms on letter - I can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Identity"?

Identity - It is a percentage of identical amino acids or nucleotides in the alignment of two sequences. Usually the identity is measured on the aligned residues with gaps ignored.

2. What is "Illumina"?

Illumina - It is a company located in San Diego, CA that provides sequencing platforms such as MiSeq, HiSeq, HiSeq2500, NextSeq and GA II.

Basic Bioinformatics Terms on letter H

These Basic Bioinformatics Terms on letter - H can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "Halotype"?

Haplotype - It is a collection of alleles in one individual that are located on one chromosome. Alleles within a haplotype are often inherited as a single unit from one generation to the next. In SNP studies, haplotypes refer to a group of genomic variations found repeatedly in many individuals within a population.

2. What is "Heat Map"?

Heat map - It is a graphical representation of data where the individual values contained in a matrix are represented as colors.

Basic Bioinformatics Terms on letter G

These Basic Bioinformatics Terms on letter - G. It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "GA II Illumina sequencing platform"?

GA II Illumina sequencing platform that generates 40 Mb sequence per run with paired read lengths of 70 bp.

2. What is "Gap"?

Gap - It is in sequencing a segment of DNA that has not been sequenced but is flanked by sequenced DNA. Also used as a synonym for insertion or deletion in sequence alignment.

Basic Bioinformatics Terms on letter F

Basic Bioinformatics Terms on letter E

These Basic Bioinformatics Terms on letter - E.It can boost vocabulary in bioinformatics. It can also enhance basic knowledge of Bioinformatics.

1. What is "E value"?

E value (Expect value) - when performing a BLAST search, you will obtain an E-value for each sequence that is retrieved.
An E-value can be thought of as the probability that two sequences are similar to each other by chance.
Therefore E-values are best when they are small (e.g. 1 x 10^-12).

2. What is "EC number"?

EC number - It is Enzyme Commission number a numerical classification scheme for enzymes based on the chemical reactions they catalyze.